[gmx-developers] remd crash with git head
David van der Spoel
spoel at xray.bmc.uu.se
Tue Jul 6 15:11:43 CEST 2010
Hi,
my run crashes with
Program mdrun-0(mpi:6539 at n106), VERSION 4.0.99-dev-20100706-0a5c397-dirty
Source code file:
/home/x_davva/GROMACS/git/gromacs/src/kernel/repl_ex.c, line:
222
Fatal error:
Two replicas (16, 17) have identical temperatures 0.000000
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
(I added some debug output to the message).
And the temperatures are not zero:
[neolith1:git/sp] % grep ref_t
~/wd/Trp-Dye/solvent/native/REMD/native{16,17}.log
/home/x_davva/wd/Trp-Dye/solvent/native/REMD/native16.log: ref_t:
322.71 322.71
/home/x_davva/wd/Trp-Dye/solvent/native/REMD/native17.log: ref_t:
325.53 325.53
Any clue?
As a side note, the runs do not terminate either, wasn't there a recent
fix from Carsten or Michael for this?
--
David van der Spoel, Ph.D., Professor of Biology
Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone: +46184714205.
spoel at xray.bmc.uu.se http://folding.bmc.uu.se
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