[gmx-developers] removal of water by keepbyz.pl script

Justin A. Lemkul jalemkul at vt.edu
Sat May 1 13:19:39 CEST 2010

tasneem jahan wrote:
> Hi,
> I am trying to remove water from hydrophobic core of lipd for my 
> membrane protein.
> but whan I am using keepbyz.pl <http://keepbyz.pl> script it  generate 
> plain text file in  .gro  of not_last_line.gro.

I don't understand what you mean.  A .gro file is a text file.

> generate expr : syntax error.

What command gives you this error?  Have you followed all the commands correctly?


> please help me out how to fix it.
> Thanks!
> -- tasneem Jahan
> Project Trainee
> C/o-Dr.Ajay K .Saxena
> Structure Biology Lab
> School Of Life Science
> Jawaharlal Nehru University
> New Delhi


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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