[gmx-developers] FW: Integerating with Eclipse

[Mark Abraham]

Hi,

Additionally, GROMACS uses an embarrassing amount of the preprocessor, and
tooling that does not implement a full parser does not cope with that.
There's less of that in more recent code (but more if you look at the
nonbonded kernels, as you likely should not ;-))

Mark


On Fri, Jul 3, 2015 at 3:22 AM Jernej Zidar <jernej.zidar at gmail.com> wrote:

> Any particular reason for trying to work on a very obsolete version?
>
> Gromacs 4.5.7 is *very* old and outdated. You'll probably have less
> problems with more recent one (anything from the 5.x branch will do).
>
> Cheers from one-north!
>
> Jernej
>
> On Thu, Jul 2, 2015 at 4:54 PM, Amr ALHOSSARY <amr_alhossary at hotmail.com>
> wrote:
> > Hi,
> >
> > I am trying to import gromacs 4.5.7 into Eclipse Luna with latest CDT,
> > following the steps proposed by Roland five years ago
> > (
> https://mailman-1.sys.kth.se/pipermail/gromacs.org_gmx-developers/2010-Janu
> > ary/003921.html ).
> >
> > Egit works well to import the files.
> > Then I call cmake in the project root, making the build directory in the
> > same src directory, using this command line:
> >
> > cmake -G"Eclipse CDT4 - Unix Makefiles" -DCMAKE_BUILD_TYPE=Debug
> > -DGMX_BUILD_OWN_FFTW=ON --build src/   ./
> >
> > and import the project using the “existing code as Makefile project”
> wizard.
> > The import works well. It compiles, runs, and debugs. However, it seems
> that
> > the indexer can not parse the files well.
> > Although the includes are available and navigable, The indexer cannot
> parse
> > a lot of type definitions and macros For example: in md.c,
> gmx_large_int_t
> > couldn’t be resolved, although I can navigate to “typedefs.h” and from
> it to
> > “types/simple.h”. Similar situation for the macro “MASTER(cr)”.
> >
> > Please advise how can I fix this out.
> >
> > Thanks for help
> >
> > Amr
> >
> >
> >
> >
> >
> > Best Regards,
> > Amr AL-HOSSARY
> >
> >
> > Amr Ali AL-HOSSARY |   Ph.D. Candidate | International PhD program in
> > Computational Biology and Bioinformatics | School of Computer
> > Engineering |   Nanyang Technological University | Singapore (GMT+8)
> > |  Email:  aalhossary at pmail.ntu.edu.sg |  Mobile: +65-94572816
> >
> >
> >
> > --
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