[gmx-developers] How to put two molecules inside the simulation box with a control on their DISTANCE and ANGLE

[Armin Solemanifar]

Hi Mark,

Sorry about this. I have my email account registered for both of them and I
simply chose the wrong one this time. Thanks for reminding me :)

Cheers,
Armin

On Tue, Feb 13, 2018 at 4:38 PM, Mark Abraham <mark.j.abraham at gmail.com>
wrote:

> Hi,
>
> This list is for discussing issues pertaining to GROMACS development,
> rather than usage. Please ask again on the gmx-users mailing list.
>
> Mark
>
> On Tue, Feb 13, 2018 at 12:42 AM Armin Solemanifar <
> armin.solemanifar at gmail.com> wrote:
>
>> Dear Gromacs users,
>>
>> I'm trying to put two peptides inside the simulation box and have the
>> ability to rotate them to face each other in a particular way before
>> starting the simulation. I only know how to put them randomly in the
>> simulation box.
>>
>> My second question is how to put them in a certain distance from each
>> other in the beginning as well.
>>
>> Cheers,
>> Armin
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