[gmx-developers] PhD student in physics looking for collaboration

Quyen V. Vu vuqv.phys at gmail.com
Fri May 25 17:34:03 CEST 2018


Hi Anna,
If you are interested in build the hybrid MC-MD model, you can contact
Prof. Toan Nguyen (toannt at hus.edu.vn )  to ask about collaboration
Here is his profile
https://scholar.google.com/citations?user=XXx7ze0AAAAJ&hl=en&oi=ao
Best,
Quyen

On Fri, May 25, 2018 at 9:19 PM, Mark Abraham <mark.j.abraham at gmail.com>
wrote:

> Hi Anna,
>
> It was good to meet and chat with you yesterday in Uppsala. We're
> generally very happy to talk over possible collaborations. If e.g. there
> was a way to combine your interest in MC sampling for polymers for your PhD
> with some of the other plans for e.g. hybrid MC-MD in GROMACS then we could
> perhaps find something interesting to do there. But currently there's not a
> strong fit with the wider GROMACS development team and non-protein polymer
> research. (Though if people know of active projects, do speak up!)
>
> Mark
>
> On Sun, May 13, 2018 at 7:22 PM Erik Lindahl <erik.lindahl at gmail.com>
> wrote:
>
>> Hi Anna,
>>
>> Very welcome!
>>
>> I'm not sure if you're aware, but several of us have backgrounds in
>> physics, and a large part of the GROMACS developers are actually based in
>> Stockholm & Uppsala ;-)
>>
>> I just browsed through your PDF quickly, but there are probably three
>> good ways to proceed:
>>
>> 1) If you want to interact in person, you are always welcome to pop over
>> and talk to the people in my & Berk's lab at SciLifeLab in Stockholm, or
>> David van der Spoel's lab at BMC in Uppsala. We should definitely do this
>> at some point to get to know you better :-)
>>
>> 2) Every two weeks, we run a watercooler-like videoconference (Wed 5pm),
>> just as a way to chat about everything that anybody might be interested in.
>> My gut feeling is that your ideas would work very well as a topic for one
>> of those discussions (IIRC, our next meeting is May 23).
>>
>> 3) If you have concrete suggestions you would like to proceed with, you
>> can start an email thread about it here, but it often works best to create
>> a new "feature" or "task" issue at redmine.gromacs.org, describe an
>> outline, and invite people to provide comments there!
>>
>> Cheers,
>>
>> Erik
>>
>>
>>
>> On Sun, May 13, 2018 at 4:52 PM, Anna Sinelnikova <
>> anna.sinelnikova at physics.uu.se> wrote:
>>
>>> Hi,
>>>
>>> My name is Anna. I am a PhD student in physics at Uppsala University,
>>> working on polymers. I am interested in collaborating with Gromacs and am
>>> interested in coming in contact with you developers to discuss
>>> possibilities.
>>>
>>> I attach a link to pdf-file with more detailed information and would be
>>> very thankful for your feedback.
>>>
>>> https://github.com/Anny-Moon/letterToGromacs
>>>
>>> Best regards,
>>>
>>> Anna
>>>
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>>
>>
>>
>> --
>> Erik Lindahl <erik.lindahl at dbb.su.se>
>> Professor of Biophysics, Dept. Biochemistry & Biophysics, Stockholm
>> University
>> Science for Life Laboratory, Box 1031, 17121 Solna, Sweden
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