[gmx-users] [Fwd: gromacs compilation problems!]

[Yiannis Nicolis]

Hello,
I had about the same problems on a Silicon Graphics so I presume the 
cause is the same.
The problem is that on Silicon the compilers (cc and f77) are 
installed and respond when the configure script tries to identify 
them, so they are identified as cc and f77.
But, the compilers are deactivated until you install your licences, 
so when the compilers are incoked they respond they need a licence to 
work.
If you have the licences you have to install them for the compilers 
to work. If you don't have them (that was our case) you have to 
install gcc and g77 and tell the configure script to use them instead 
of cc and f77 (I don't remember exactly how, try ./configure -h to 
see the options).
Hope that helps (it should if this is really a licence issue).
Yiannis
-------------------------------------------
Dr. Ioannis Nicolis
Laboratoire de Biomathematiques et Informatique
Faculte de Pharmacie/ Universite Paris V
4, av. de l'Observatoire
75006 Paris
France
-------------------------------------------

>Hi,
>
>I have followoing compilation problems:
>
>first is a message at configure output. what could i do against this??
>
>// logfile start
>checking build system type... mips-sgi-irix6.5
>checking host system type... mips-sgi-irix6.5
>checking for a BSD compatible install... /usr/freeware/bin/install -c
>checking whether build environment is sane... yes
>checking for mawk... no
>checking for gawk... gawk
>checking whether make sets ${MAKE}... yes
>checking for cc... cc
>checking for C compiler default output... a.out
>checking whether the C compiler works... yes
>checking whether we are cross compiling... no
>checking for executable suffix...
>checking for object suffix... o
>checking for dummy main to link with Fortran 77 libraries... none
>checking for Fortran 77 name-mangling scheme... lower case, underscore, no
>extra underscore
>checking how to run the C preprocessor... cc -E
>MIPSpro Compilers: Version 7.30
>MIPSpro Compilers: Version 7.30
>checking whether cc accepts -n32 -r10000 -mips4 -O3 -OPT:IEEE_arithmetic=3
>-OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3
>-OPT:Olimit=0:roundoff=3:alias=typed -woff 1174 -D__INLINE_INTRINSICS... no
>*******************************************************************
>* Sorry, these optimization settings don't seem to work for       *
>* your C compiler. Use make CFLAGS=..., or edit the top Makefile. *
>*******************************************************************
>checking whether f77 accepts -n32 -r10000 -mips4 -O3 -OPT:IEEE_arithmetic=3
>-OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3
>-OPT:Olimit=0:roundoff=3:alias=typed -OPT:cray_ivdep=TRUE... No such feature
>exists (-5,116:2) No such file or directory
>
>  This product (f77) requires a license password.
>  For license installation and trouble shooting
>  information visit the web page:
>
>          http://www.sgi.com/Support/Licensing/install_docs.html
>
>
>logfile stop //
>
>
>
>
>and the second is during the make routine
>annotation first:
>i have installed the FFTW and have done the enviroment settings also!!
>
>//logfile start
>
>Making all in src
>         cd .. \
>           && CONFIG_FILES= CONFIG_HEADERS=src/config.h \
>              /bin/sh ./config.status
>config.status: creating src/config.h
>config.status: src/config.h is unchanged
>         make  all-recursive
>Making all in gmxlib
>         source='3dview.c' object='3dview.lo' libtool=yes \
>         depfile='.deps/3dview.Plo' tmpdepfile='.deps/3dview.TPlo' \
>         depmode=sgi /bin/sh ../../config/depcomp \
>         /bin/sh ../../libtool --mode=compile cc -DHAVE_CONFIG_H -I. -I.
>-I../../src   -I../../include
>-DGMXLIBDIR=\"/prog3/GROMACS3.0/test//share/gromacs/top\" 
>-I/prog3/FFTW/include
>   -c -o 3dview.lo `test -f 3dview.c || echo './'`3dview.c
>cc -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include
>-DGMXLIBDIR=\"/prog3/GROMACS3.0/test//share/gromacs/top\" 
>-I/prog3/FFTW/include
>-c 3dview.c -Wp,-MDupdate,.deps/3dview.TPlo
>No such feature exists (-5,116:2) No such file or directory
>
>  This product (cc) requires a license password.
>  For license installation and trouble shooting
>  information visit the web page:
>
>          http://www.sgi.com/Support/Licensing/install_docs.html
>
>  To obtain a Permanent license (proof of purchase
>  required) or an Evaluation license please
>  visit our license request web page:
>
>          http://www.sgi.com/Products/license.html
>
>          or send a blank email message to:
>
>          license at sgi.com
>
>  In North America, Silicon Graphics' customers may request
>  Permanent licenses by sending a facsimile to:
>
>          (650) 390-0537
>
>          or by calling our technical support hotline
>
>          1-800-800-4SGI
>
>  If you are Outside of North America or you are not a Silicon
>  Graphics support customer then contact your local support provider.
>
>cc-1174 cc: WARNING File = 3dview.c, Line = 287
>   The variable "i" was declared but never referenced.
>
>logfile stop//
>
>after i complet the installation, gromacs runs but it is rather slow!!
>In this configuration slower than 2.1
>
>
>Thanks for your help
>
>
>Bernd
>
>--
>Bernd Rupp
>
>Heinrich-Heine-Universitaet Duesseldorf	| Gebaeude 26.23  Raum O2.33
>Institut fuer Pharmazeutische Chemie    | Tel.: 0211 / 81 - 1 38 27
>Universitaetsstr. 1                     | Fax.: 0211 / 81 - 1 38 47
>40225 Duesseldorf                       | E-Mail: 
>rupp at pharm.uni-duesseldorf.de