[gmx-users] mpirun on lam again
lindahl at stanford.edu
Wed Apr 17 06:56:03 CEST 2002
>looks like I have these in /usr/local/lib :
>sasidhar at cluster:/usr/local/lib$ ls *mpi.so
>libfftw_mpi.so libmd_mpi.so libsfftw_mpi.so
>libgmx_mpi.so librfftw_mpi.so libsrfftw_mpi.so
>sasidhar at cluster:/usr/local/lib$ ls *mpi.so.2
>libfftw_mpi.so.2 libmd_mpi.so.2 libsfftw_mpi.so.2
>libgmx_mpi.so.2 librfftw_mpi.so.2 libsrfftw_mpi.so.2
If they are present on all the cluster nodes it should be ok - no reason
to use LD_LIBRARY_PATH.
>I also used -x LD_LIBRARY_PATH option with mpirun. Still same error.
>Lam version: LAM 6.5.6/MPI 2 C++/ROMIO - University of Notre Dame
>May be lam version is a problem ?
Ah, that could be it. Different versions of LAM are *NOT* compatible
with each other according to the LAM homepage homepage, you have to run
the code with exactly the same version of LAM as you used to compile it.
Either install the lam package from the gromacs homepage, or compile it
(it's easy) on your system. I'd recommend the latter :-)
More information about the gromacs.org_gmx-users