[gmx-users] gmx3.1.4 on OSX
v.gogonea at csuohio.edu
Thu Aug 1 21:14:12 CEST 2002
Thank you Choon-Peng,
I recompiled 3.1.4 as you suggested, but I still get this segmentation
fault error. I tried to run pdb2gmx in the tutor/gmxdemo folder and the
only thing printed out in the output.pdb2gmx file is:
:-) G R O M A C S (-:
I assume that pdb2gmx does not use fftw, so I don't think that
recompiling it will help.
On Wednesday, July 31, 2002, at 10:35 PM, Choon Peng wrote:
> Hi Valentin,
> I've just successful ran Gromacs on our iMac G4 800MHz with OSX
> Compiled FFTw with "--host=powerpc --enable-float"
> and Gromacs 3.1.4 with "--disable-shared --without-x".
> I used the default cc (GCC 2.96) for both codes. Have to use /bin/bash
> configure Gromacs.
> When you run grompp, have to modify /lib/cpp (for Linux) to simply
> Ran villin benchmark which gave 2150 ps/day (< reported on Gromacs
> Give "-disable-shared" a try.
> Hope this is useful.
> Choon-Peng CHNG
> Scientific Programmer
> BioInformatics Institute (BII)
> 21, Heng Mui Keng Terrace, Rm 03-53, Singapore 119613
> Tel (O): (65) 68746173
> Fax (O): (65) 67781250
> On Wed, 31 Jul 2002, Valentin Gogonea wrote:
>> Hi Chris,
>> Thank you for the list of instructions. I followed step-by-step your
>> instructions, but I still get segmentation fault. I also tried what Sid
>> suggested. Actually the default in the configure file is --enable-
>> By the way I have fftw installed through fink, but it works fine with
>> gromacs 3.1.1. I have no clue what can be the problem.
>> Thanks for help.
> gmx-users mailing list
> gmx-users at gromacs.org
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
-------------- next part --------------
A non-text attachment was scrubbed...
Name: not available
Size: 1916 bytes
Desc: not available
More information about the gromacs.org_gmx-users