[gmx-users] simulation of a small peptide in water with calcium ion

David spoel at xray.bmc.uu.se
Sun Dec 15 20:12:45 CET 2002


On Fri, 2002-12-13 at 17:09, Soumendra Rana wrote:
> Dear All,
>       I wanna do a simulation of a small peptide in water in presence of
> calcium ion.Can anybody give me a little hint how to start with for this
> purpose/how to include that in .top file.Thanx u all in advance.
Put it in the pdb file. pdb2gmx will treat it correctly
> 
> 
> Soumendra Rana
> Research Scholar
> BioOrganic Lab.
> Dept.of Chemistry & Chemical Engineering
> IIT Bombay,Powai-400076
> Maharastra,India
> E-mail-soumendraR at netscape.net
> 
> 
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-- 
Groeten, David.
________________________________________________________________________
Dr. David van der Spoel, 	Biomedical center, Dept. of Biochemistry
Husargatan 3, Box 576,  	75123 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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