[gmx-users] g_dyndom

David van der Spoel spoel at xray.bmc.uu.se
Thu Dec 19 17:03:28 CET 2002

On Thu, 2002-12-19 at 20:39, Ruben Martinez Buey wrote:
> Hi all,
> I am trying to run g_dyndom but I cannot get it!!
> What are the input files for g_gyndom??
> -f .... the output pdb file from dyndom called mi-title_pdb??
> -n .... What file is it?? Is it another output file from dyndom? which?

index file is to separate which doman is whioch. you have to make it
yourself. maybe check how dyndom separates the domains. if it is by a
chain label you can use that in make_ndx

Groeten, David.
Dr. David van der Spoel, 	Biomedical center, Dept. of Biochemistry
Husargatan 3, Box 576,  	75123 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel

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