[gmx-users] zinc force field parameters
hritz at tom.fos.su.se
Wed Feb 27 11:07:03 CET 2002
I have protein containning four-coordinated zinc atom, between one HIS and
three CYS. Distance between ZN and N of HIS is 2.0 A and distance between
ZN and S of CYS is 2.3 A. I would like to ask You for advice: What charges
should be used for ZN, N (HIS), S (CYS) in such system?
I Gromacs force field is as default charge of ZN +2, but I think it's too
much when it's coordinated in protein. Has someone experience with metals
coordinated in proteins?
PS: Can You recomend me some linux program for easy manual(by eyes) puting
of ligand to protein. Thanks
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