[gmx-users] DNA topology

Dmitry Kovalsky dikov at mail.univ.kiev.ua
Wed Jan 9 09:53:19 CET 2002

My coworker wants to simulate DNA with protein but encountered some problems.
pdb2gmx cann't convert nucleotides to gro format writing "Fatal error: Residue 'A' not found in residue topology database" Renaming A, C, G, T to DADE, DGUA, DCYT, DTHY result the same errors. Nucleotide topologies obtained from ProDrug server donnt resolve the problem

Please tell the solution or give the link where this is bescriubed

Cheers Dikov

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