[gmx-users] unable to compile from source

Peter C. Lai sirmoo at cowbert.2y.net
Wed Jul 3 17:33:30 CEST 2002

On Wed, Jul 03, 2002 at 05:08:03PM +0200, Bert de Groot wrote:
> "Peter C. Lai" wrote:
> > 
> > Yes i did that too. What happens is I try running pdb2gmx or something
> > and it returns "unable to map soname libgmx.so.3 to:
> > /usr/local/gromacs-3.1/mips-sgi-irix6.5/r10000/lib/libgmx.so.3"
> > 
> Which Irix version are you running? Sounds a bit like your installation
> is broken. The binaries were compiled under irix6.5 on an octane.

IRIX 6.5.15m IP30 (octane)
hmm this is interesting, i reinstalled the binaries and pdb2gmx works now.
I put it in my home directory instead of /usr/local
I dunno if that has makes a difference.
Thanks for your support anyway.

> You get the same error message when you've got an n32/o32 mismatch between
> an executable and a shared library. But since the gmx binaries and lib were
> built on the same machine, it must be an incompatability with your dynamic
> loader.
> Bert
> ____________________________________________________________________________
> Dr. Bert de Groot
> Max Planck Institute for Biophysical Chemistry
> Theoretical molecular biophysics group
> Am Fassberg 11 
> 37077 Goettingen, Germany
> tel: +49-551-2011306, fax: +49-551-2011089
> email: bgroot at gwdg.de
> http://www.mpibpc.gwdg.de/abteilungen/071/bgroot
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Peter C. Lai
University of Connecticut
Dept. of Molecular and Cell Biology | Undergraduate Research Assistant
Yale University School of Medicine
Center for Medical Informatics | Research Assistant

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