[gmx-users] image jumps in VMD

Richard Filmer rfilmer at wehi.EDU.AU
Tue Jun 25 02:41:34 CEST 2002

This will create a trjectory file with the proteins centered.

trjconv -f input.trr -o output.trr -s input.gro -center -pbc whole

I believe this same program can also be used to convert frames of a
trajectory to PDB files.

Richard Filmer.

On Mon, 24 Jun 2002, Dr. Y. U. Sasidhar wrote:

> I use vmd_1.72 to visualize gromacs md trajectory using "animate".
> 1. Frequently the image jumps between edges and goes out of visible
> screen window.
> How do I avoid this ? ( centering in a frame also does not work ).
> How can I have image always in field of view so that I can view
> trajectory completely without "interruptions".
> 2. Can I save pdb file of a particular frame number in VMD ?
> Sasidhar
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