[gmx-users] image jumps in VMD

[Dr. Y. U. Sasidhar]

Richard Filmer wrote:

>This will create a trjectory file with the proteins centered.
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>trjconv -f input.trr -o output.trr -s input.gro -center -pbc whole
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We tried your advice. It works with ngmx, but not with  VMD.
For some reason VMD is seeing only one frame. Any further thoughts on this ?
Sasidhar

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>>I use vmd_1.72 to visualize gromacs md trajectory using "animate".
>>1. Frequently the image jumps between edges and goes out of visible
>>screen window.
>>How do I avoid this ? ( centering in a frame also does not work ).
>>How can I have image always in field of view so that I can view
>>trajectory completely without "interruptions".
>>
>>2. Can I save pdb file of a particular frame number in VMD ?
>>
>>Sasidhar
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