[gmx-users] reading frame details
David van der Spoel
spoel at xray.bmc.uu.se
Wed Sep 25 09:14:36 CEST 2002
On Wed, 2002-09-25 at 08:43, subramaniam sivaraman wrote:
> I am able to generate the ramachandran movie using
> the xrama with .tpr and .trr inputs. I would like to
> know why is a start button there in the movie window,
> which when clicked on it runs with the aminoacids
> changing the positions randomly. I would like to know
> what is the significance of the reading frame and the
> ps(picoseconds) and what is the movie doing with it.
> Is it necessary for us to always click start button
> while analyzing the ramachandran plot? while doing the
> phi-psi angle prediction. Thank you.
It shows the phi-psi angles as a function time. If you want all of them
in one plot use g_rama.
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Dr. David van der Spoel, Biomedical center, Dept. of Biochemistry
Husargatan 3, Box 576, 75123 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://zorn.bmc.uu.se/~spoel
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