[gmx-users] reading frame details

David van der Spoel spoel at xray.bmc.uu.se
Wed Sep 25 09:14:36 CEST 2002

On Wed, 2002-09-25 at 08:43, subramaniam sivaraman wrote:
> Hi,
>    I am able to generate the ramachandran movie using
> the xrama with .tpr and .trr inputs. I would like to
> know why is a start button there in the movie window,
> which when clicked on it runs with the aminoacids
> changing the positions randomly. I would like to know
> what is the significance of the reading frame and the
> ps(picoseconds) and what is the movie doing with it.
> Is it necessary for us to always click start button
> while analyzing the ramachandran plot? while doing the
> phi-psi angle prediction. Thank  you.
It shows the phi-psi angles as a function time. If you want all of them
in one plot use g_rama.
>                              s.sivaraman
> ________________________________________________________________________
> Missed your favourite TV serial last night? Try the new, Yahoo! TV.
>        visit http://in.tv.yahoo.com
> _______________________________________________
> gmx-users mailing list
> gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please don't post (un)subscribe requests to the list. Use the 
> www interface or send it to gmx-users-request at gromacs.org.
Groeten, David.
Dr. David van der Spoel, 	Biomedical center, Dept. of Biochemistry
Husargatan 3, Box 576,  	75123 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://zorn.bmc.uu.se/~spoel

More information about the gromacs.org_gmx-users mailing list