[gmx-users] small molecule topologies with PRODRG

Daan Virtual vdava at davapc1.bioch.dundee.ac.uk
Wed Sep 25 15:34:08 CEST 2002


Dear GMX-ers

Because several similar questions concerning the small molecule topology
generator PRODRG are being asked repeatedly I have finally taken the time
to write a FAQ. This is linked from the PRODRG home page
http://davapc1.bioch.dundee.ac.uk/programs/prodrg

Hope this helps.

cheers

Daan

##############################################################################

Dr. Daan van Aalten                    Wellcome Trust CDA Fellow
Wellcome Trust Biocentre, Dow Street   TEL: ++ 44 1382 344979
Div. of Biol.Chem. & Mol.Microbiology  FAX: ++ 44 1382 345764
School of Life Sciences                E-mail: dava at davapc1.bioch.dundee.ac.uk
Univ. of Dundee, Dundee DD1 5EH, UK    WWW: http://davapc1.bioch.dundee.ac.uk

        O     C           O     C         Visit the PRODRG server to take
        "     |           "     |         the stress out of your topologies!
  N--c--C--N--C--C--N--C--C--N--C--C--O
     |           "     |           "      http://davapc1.bioch.dundee.ac.uk/
     C-C-O       O   C-C-C         O             programs/prodrg/prodrg.html
       "
       O




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