[gmx-users] linux crash

David spoel at xray.bmc.uu.se
Wed Apr 2 20:06:02 CEST 2003


On Wed, 2003-04-02 at 18:07, Thil Batuwangala wrote:
> well, I am basically following the Jonhn Kerrigan tutorial word for word 
> ... all programs run fine so I am not suspecting any of the input files. 
> my mdout.mdp looks like this:
> 

> ; OPTIONS FOR BONDS     =
> constraints              = hbonds
> ; Type of constraint algorithm =
It should be h-bonds

your time step may be too large for running without constraints.


-- 
Groeten, David.
________________________________________________________________________
Dr. David van der Spoel, 	Dept. of Cell and Molecular Biology
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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