[gmx-users] com motion

[Mustafa Toprakçý]

 Dear Gromacs Team,
I would like to ask one issue. I have defined a substrate-enzyme
complex system, using pdb2gmx as 1 molecule in the .top file. I might
have also defined the same system as 2 molecules such as protein and
ligand in the .top file.
I am simülating center of mass motion, Does it differ for the program
to see the system as one or two molecules in the aspect of ligand center
of mass simülation?

Thanks
Mustafa




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