[gmx-users] A problem about the format of the trajectory files ?

Erik Lindahl lindahl at stanford.edu
Fri Apr 11 10:02:01 CEST 2003

Hi Yong,

If you're looking for a general visualizer there are far better  
alternatives than ngmx; the only advantage with ngmx is that it doesn't  
require OpenGL, so it's useful when you want to display something over  
the network using X.

Pymol, VMD, and gOpenMol are better alternatives for visualization -  
I've chatted with Warren DeLano, and we'll try to get Gromacs support  
built into Pymol in the future...



On Friday, Apr 11, 2003, at 00:41 US/Pacific, yong pei wrote:

> Dear Erik,
>   I writed a MD program with simplied parameters to
> modeling the interface systems. Now I want to see the
> tracjectory 'movie' with my program outputs. To arrive
> this, I wanted to use the 'ngmx' tool in Gromacs
> software packages. Then, my question is, how can I
> control the output of trajectory files in my program.
> That is, can you tell me the detail output format of
> the trajectory files?
>   Thank you,
>   YongPei
>   NanJin Univ.,P.R.China
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Erik Lindahl, MSc, PhD     <lindahl at stanford.edu>
D109, Fairchild Building
Dept. Structural Biology, Stanford University School of Medicine
Tel. 650-7250754    Fax. 650-7238464

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