[gmx-users] GMX Installation on SGI

Dastmalchi dastmalchi.s at tbzmed.ac.ir
Tue Dec 2 14:45:01 CET 2003


G'day,
I am trying to install GMX on an SGI machine and need some help.
I have installed fftw according to the instruction with no extra flag and assuming that it just installs double-precision FFTW. I have extracted the content of fftw.tar file and then I did cd into the created directory (/usr/people/programs/fftw-2.1.3/). I did ./configure and the rest of the instruction given for installation. Then I have uncompressed the tar file of the GMX and tried to run ./configure command (I did this in the (/usr/people/programs/gromacs-3.1.4 directory). I have pasted at the end of email what I can see on the screen. I also get a message at the end saying that 
configure: error: Cannot find any single precision sfftw.h or fftw.h
....
However, I can see that fftw.h is in /usr/local/include directory.
When I was installing fftw, I used "check" option and it was checking lots of stuff and the answer was ok all the time.

Would you please let me know, how can I be sure that fftw has been installed properly?
What is the problem with installation of GMX?

Cheers,
Siavoush

PS: please see below for the messages that I get when I run configure.
checking build system type... mips-sgi-irix6.5

checking host system type... mips-sgi-irix6.5

checking for a BSD compatible install... config/install-sh -c

checking whether build environment is sane... yes

checking for awk... awk

checking whether make sets ${MAKE}... yes

checking for cc... cc

checking for C compiler default output... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for executable suffix... 

checking for object suffix... o

checking whether we are using the GNU C compiler... no

checking whether cc accepts -g... yes

checking for style of include used by make... GNU

checking dependency style of cc... sgi

checking for f77... f77

checking whether we are using the GNU Fortran 77 compiler... no

checking whether f77 accepts -g... yes

checking how to get verbose linking output from f77... -v

checking for Fortran 77 libraries... -L/usr/lib32/mips4/r10000 -L/usr/lib32/mips4 -L/usr/lib32 -lftn -lm

checking for dummy main to link with Fortran 77 libraries... none

checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore

checking how to run the C preprocessor... cc -E

checking whether cc accepts -r10000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3 -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174 -D__INLINE_INTRINSICS... no

*******************************************************************

* Sorry, these optimization settings don't seem to work for *

* your C compiler. Use make CFLAGS=..., or edit the top Makefile. *

*******************************************************************

checking whether f77 accepts -r10000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3 -OPT:Olimit=0:roundoff=3:alias=typed -OPT:cray_ivdep=TRUE... yes

checking for ident... /usr/sbin/ident

checking whether the compiler supports ident... yes

checking for non-GNU ld... /usr/bin/ld

checking if the linker (/usr/bin/ld) is GNU ld... no

checking for /usr/bin/ld option to reload object files... -r

checking for BSD-compatible nm... /usr/bin/nm -B

checking whether ln -s works... yes

checking how to recognise dependant libraries... pass_all

checking for dlfcn.h... yes

checking the maximum length of command line arguments... 8192

checking command to parse /usr/bin/nm -B output from cc object... ok

checking for objdir... .libs

checking for ranlib... :

checking for strip... strip

checking if cc static flag works... yes

checking for cc option to produce PIC... 

checking if cc PIC define -DPIC works... yes

checking if cc supports -c -o file.o... no

checking if we can lock with hard links... yes

checking whether the cc linker (/usr/bin/ld -n32) supports shared libraries... yes

checking how to hardcode library paths into programs... immediate

checking whether stripping libraries is possible... no

checking dynamic linker characteristics... irix6.5 ld.so

checking if libtool supports shared libraries... yes

checking whether to build shared libraries... no

checking whether to build static libraries... yes

configure: creating libtool

appending configuration tag "F77" to libtool

checking if libtool supports shared libraries... yes

checking whether to build shared libraries... no

checking whether to build static libraries... yes

checking for f77 option to produce PIC... 

checking if f77 PIC define -DPIC works... yes

checking if f77 supports -c -o file.o... no

checking if we can lock with hard links... yes

checking whether the f77 linker (/usr/bin/ld -n32) supports shared libraries... yes

checking how to hardcode library paths into programs... immediate

checking whether stripping libraries is possible... no

checking dynamic linker characteristics... irix6.5 ld.so

checking whether ln -s works... yes

checking for special C compiler options needed for large files... no

checking for _FILE_OFFSET_BITS value needed for large files... no

checking for _LARGE_FILES value needed for large files... no

checking for _LARGEFILE_SOURCE value needed for large files... no

checking for fseeko... yes

checking for sqrt in -lm... yes

checking for sfftw.h... no

checking for fftw.h... no
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