[gmx-users] installation problem on Compaq Alpha ev68 with Tru64 unix OS

[Wei Fu]

Hello, 

       I install both gromacs3.1.4 and gromacs3.2.0 on Compaq supercomputer (Alphaserver ev68 with Tru64 unix OS), I set MPI and fftw as following:

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setenv CPPFLAGS -I/usr/local/packages/fftw-2.1.3/include
setenv LDFLAGS -L/usr/local/packages/fftw-2.1.3/lib

setenv MPICC /usr/bin/cc
setenv LIBS "-lmpi"
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       Then, execute ./configure --enable-mpi --prefix /path_name  --program-suffix=_mpi

it told me:                 GROMACS is ready to compile.
________________________________________________________________________________________

then,

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      make

the screen has some compile problem, like

cc: Info: protonate.c, line 166: A carriage-return character was encountered; it
 is being treated as white space. (foundcr)

--^
cc: Info: protonate.c, line 167: A carriage-return character was encountered; it
 is being treated as white space. (foundcr)
  thanx(stderr);
----------------^
cc: Info: protonate.c, line 168: A carriage-return character was encountered; it
 is being treated as white space. (foundcr)

^
cc: Info: protonate.c, line 169: A carriage-return character was encountered; it
 is being treated as white space. (foundcr)
  return 0;
-----------^
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I still execute            make install
 
the information appears:

Making all in html
No suffix list.
Making all in .
No suffix list.
Making all in images
No suffix list.
Making all in online
No suffix list.
No suffix list.
Making all in include
No suffix list.
Making all in .
No suffix list.
Making all in types
No suffix list.
Making all in man
No suffix list.
Making all in man1
No suffix list.
No suffix list.
No suffix list.

The file 'core.mdrun.iam763.0' was generated in the directory: /usr/users/5/fuw/gromacs-3.2.0_beta1/alphaev68-dec-osf5.1/bin

  When I run mdrun, the error information is as follows

GenCap: i 0 ctx 60-60-60 Entries 1 Nodes 0-0 Railmask 1
Segmentation fault (core dumped)

  Any suggestion shall be highly appreciated !!!


Cheers,

Linda

2003-12-14
************************************************************
  Wei Fu (Linda)
  Postdoctoral Research Associate
  Department of Biology and Biochemistry 
  University of Houston
  4800 Calhoun Rd. HSC #402C
  Houston, TX 77204-5001   USA
  Phone:713-743-8355(o)  713-795-9270(h) 
  Fax:713-743-8351 
  Email: fuwei at adrik.bchs.uh.edu
  http://adrik.bchs.uh.edu/~fuwei/
**************************************************************