[gmx-users] installation problem on Compaq Alpha ev68 with Tru64 unix OS

[Erik Lindahl]

Hi Wei,

This might be a problem with the formatting in the file - there seems  
to be dos-style carriage-return/line feed. We'll try to check it, but  
you could help us by running that file through "dos2unix" or a similar  
program, and see if that works.

I *suspect* there is something else that causes your real problem, but  
those errors should be more visible once this is fixed.

Cheers,

Erik

running
On Dec 14, 2003, at 10:48 AM, Wei Fu wrote:

> Hello,
>
>        I install both gromacs3.1.4 and gromacs3.2.0 on Compaq  
> supercomputer (Alphaserver ev68 with Tru64 unix OS), I set MPI and  
> fftw as following:
>
> ____________________________________________________________
> setenv CPPFLAGS -I/usr/local/packages/fftw-2.1.3/include
> setenv LDFLAGS -L/usr/local/packages/fftw-2.1.3/lib
>
> setenv MPICC /usr/bin/cc
> setenv LIBS "-lmpi"
> _______________________________________________________________________ 
> _________________
>        Then, execute ./configure --enable-mpi --prefix /path_name   
> --program-suffix=_mpi
>
> it told me:                 GROMACS is ready to compile.
> _______________________________________________________________________ 
> _________________
>
> then,
>
> _______________________________________________________________________ 
> _________________
>       make
>
> the screen has some compile problem, like
>
> cc: Info: protonate.c, line 166: A carriage-return character was  
> encountered; it
>  is being treated as white space. (foundcr)
>
> --^
> cc: Info: protonate.c, line 167: A carriage-return character was  
> encountered; it
>  is being treated as white space. (foundcr)
>   thanx(stderr);
> ----------------^
> cc: Info: protonate.c, line 168: A carriage-return character was  
> encountered; it
>  is being treated as white space. (foundcr)
>
> ^
> cc: Info: protonate.c, line 169: A carriage-return character was  
> encountered; it
>  is being treated as white space. (foundcr)
>   return 0;
> -----------^
> No suffix list.
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>
> _______________________________________________________________________ 
> _________________
>
> I still execute            make install
>
> the information appears:
>
> Making all in html
> No suffix list.
> Making all in .
> No suffix list.
> Making all in images
> No suffix list.
> Making all in online
> No suffix list.
> No suffix list.
> Making all in include
> No suffix list.
> Making all in .
> No suffix list.
> Making all in types
> No suffix list.
> Making all in man
> No suffix list.
> Making all in man1
> No suffix list.
> No suffix list.
> No suffix list.
>
> The file 'core.mdrun.iam763.0' was generated in the directory:  
> /usr/users/5/fuw/gromacs-3.2.0_beta1/alphaev68-dec-osf5.1/bin
>
>   When I run mdrun, the error information is as follows
>
> GenCap: i 0 ctx 60-60-60 Entries 1 Nodes 0-0 Railmask 1
> Segmentation fault (core dumped)
>
>   Any suggestion shall be highly appreciated !!!
>
>
> Cheers,
>
> Linda
>
> 2003-12-14
> ************************************************************
>   Wei Fu (Linda)
>   Postdoctoral Research Associate
>   Department of Biology and Biochemistry
>   University of Houston
>   4800 Calhoun Rd. HSC #402C
>   Houston, TX 77204-5001   USA
>   Phone:713-743-8355(o)  713-795-9270(h)
>   Fax:713-743-8351
>   Email: fuwei at adrik.bchs.uh.edu
>   http://adrik.bchs.uh.edu/~fuwei/
> **************************************************************
>
>
>
>
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