[gmx-users] Re: installation problem on Compaq Alpha ev68 with Tru64 unix OS (Erik Lindahl)

[David]

On Mon, 2003-12-15 at 22:50, Wei Fu wrote:
> Hi, Erik,
> 
>     Thanks for your reply.
> 
>    I have solved the "dos2unix" problem, but the new problem were found as follows when I execute make command.  
> 
> 
> *******************************************************************************************
> No suffix list.
> No suffix list.
> No suffix list.
> cc: Info: index.c, line 259: In the initializer for chains[1], "pnoh" does not h
> ave a constant address, but occurs in a context that requires an address constan
> t.  This is an extension of the language. (addrconstext)
>   const char **chains[] = { NULL,pnoh,calpha,bb,mc,mcb,mch,mch,mch,pnodum };
> ---------------------------------^

Which version of gromacs is this? 3.2.0beta should have this bit fixed.


> 
> And after "make install", some commands do not work.
> 
> For example:
> 
> g_dipoles: bad substitution

g_dipoles is a shell script, we are working on this.

> 
> mdrun: 
>       GenCap: i 0 ctx 60-60-60 Entries 1 Nodes 0-0 Railmask 1
>       Segmentation fault (core dumped)

Can you be more specific? i.e. should this have been started with
mpirun? Does grompp work? gmxdump?


-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assist. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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