[gmx-users] bouncing molecules

Dallas Warren dallas.warren at vcp.monash.edu.au
Tue Dec 23 01:31:02 CET 2003

>P.S. If you want to see the trajectory in VMD without those molecules moving
>from one side of the box to the other,  you can use trjconv and the
>flags -pbc and -ur. Check gmx e-mail list, think this issue was already
>asked by someone.

VMD also now supports displaying the box on each face of itself.

Catch ya,

Dr. Dallas Warren
Research Fellow
Department of Pharmaceutical Biology and Pharmacology
Victorian College of Pharmacy, Monash University
381 Royal Parade, Parkville VIC 3010
dallas.warren at vcp.monash.edu.au
+61 3 9903 9083
When the only tool you own is a hammer, every problem begins to resemble a nail.
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