[gmx-users] bouncing molecules

Nuno R. L. Ferreira nunolf at ci.uc.pt
Tue Dec 23 16:03:01 CET 2003

It displays the "periodical conditions" given the coordinates of the box.
  ----- Original Message ----- 
  From: Dallas Warren 
  To: gmx-users at gromacs.org 
  Sent: Tuesday, December 23, 2003 12:18 AM
  Subject: Re: [gmx-users] bouncing molecules

    P.S. If you want to see the trajectory in VMD without those molecules moving
    from one side of the box to the other,  you can use trjconv and the
    flags -pbc and -ur. Check gmx e-mail list, think this issue was already
    asked by someone.

  VMD also now supports displaying the box on each face of itself.

  Catch ya,

  Dr. Dallas Warren
  Research Fellow
  Department of Pharmaceutical Biology and Pharmacology
  Victorian College of Pharmacy, Monash University
  381 Royal Parade, Parkville VIC 3010
  dallas.warren at vcp.monash.edu.au
  +61 3 9903 9083
  When the only tool you own is a hammer, every problem begins to resemble a nail. 
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20031223/33fc1c08/attachment.html>

More information about the gromacs.org_gmx-users mailing list