[gmx-users] editconf problem!!or rtp problem!!

[Anton Feenstra]

David van der Spoel wrote:
> 
> On Thu, 2003-02-20 at 11:40, Anton Feenstra wrote:
> > nanyu101 wrote:
> > >
> > > Dear gmx-users,
> > >  I have tried to make a hole on popc128a.pdb that was downloaded
> > > from Dr.Tieleman's web,I just run editconf -f popc128a.pdb -o popc.gro.
> > > And then I run editconf -f popc.gro -o popc.pdb.When I viewed the
> > > popc.pdb,the structure was destroyed,I think that my rtp file of
> > > popc is wrong.rtp file was created myself in Gromos96 43a2x.Do you
> > > have a rtp file for popc?
> >
> > Are the atoms in your .pdb/.gro file in the same order as those in the .rtp?
> 
> Editconf does not use the rtp file at all...

Ah, I misread the problem. So you do a .pdb -> .gro -> .pdb conversion
using only editconf? If so, what do you mean by 'destroyed'? Are there
bonds missing? That is probably a problem of your viewer.


-- 
Groetjes,

Anton
 _____________ _______________________________________________________
|             |                                                       |
|  _   _  ___,| K. Anton Feenstra                                     |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
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|             | Feenstra at chem.vu.nl - www.chem.vu.nl/~feenstra/       |
|             | "I'm Not Gonna Die Here !" (Sphere)                   |
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