[gmx-users] Segmentation fault

K.A. Feenstra Feenstra at chem.vu.nl
Mon Jan 20 08:33:47 CET 2003


Itamar Kass wrote:
>   HI all, I have gromacs 3.1.5 on a OSX 10.2.3 box, it run grate, till I 
> try to pre-compile the mdrun file. When I write "grompp -f md.mdp -c 
> m2.gro -r m2.gro -p m2.top -o m2_vacou.tpr" the machine answer 
> "Segmentation fault". Now, I know the machine hate me, but I can I over 
 > come it?

It must have at least done something before the segmentation fault.
What are the last messages before that?


> By the way, the program does not run over X11 only by terminal, does it 

By default, only a terminal interface is used. There is an X11 (Motif)
interface to each program, but I don't know if that works on OSX (it
should), and it isn't really fully functionaly anyway... :-(


-- 
Groetjes,

Anton
  ________ ___________________________________________________________
|        | Anton Feenstra                                            |
| .      | Dept. of Pharmacochemistry - Vrije Universiteit Amsterdam |
| |----  | De Boelelaan 1083 - 1081 HV Amsterdam - The Netherlands   |
| |----  | Tel: +31 20 44 47608 - Fax: +31 20 44 47610               |
| ' __   | Feenstra at chem.vu.nl - http://www.chem.vu.nl/afdelingen/FAR|
|  /  \  |-----------------------------------------------------------|
| (    ) | Dept. of Biophysical Chemistry - University of Groningen  |
|  \__/  | Nijenborgh 4 - 9747 AG Groningen - The Netherlands        |
|   __   | Tel +31 50 363 4327 - Fax +31 50 363 4800                 |
|  /  \  | K.A.Feenstra at chem.rug.nl - http://md.chem.rug.nl/~anton   |
| (    ) |-----------------------------------------------------------|
|  \__/  | "If You See Me Getting High, Knock Me Down"               |
|        | (Red Hot Chili Peppers)                                   |
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