[gmx-users] (no subject)

[Anton Feenstra]

Itamar Kass wrote:
>    Hi fellows, I try to make a hole using the modified mdrun made by Graham.  
> the program works fine and I have a good results.  The starnge thing is that
> when I run rhe mdrun:
> mdrun -v -hole -holep hpcyl.mdp ...
> I got: 
> ' for variable holetype, using 'Cyl'
> Next time use one of: 'Cyl' 'Grasp_bin' 'Grasp_ascii' 'MSMS'
> ' for variable debugsurf, using 'no'
> Next time use one of: 'no' 'yes'
> ' for variable resforces, using 'no'
> Next time use one of: 'no' 'yes'
> but I entered all thus parameters.  Does someone know about it and how to solve it?

Your .mdp file might contain spurious CR and/or LF characters, e.g.
from ASCII ftp, from MSwin editors (or other source). There are tools
to fix that, ask you local Unix addict.


-- 
Groetjes,

Anton
  _____________ _______________________________________________________
|             |                                                       |
|  _   _  ___,| K. Anton Feenstra                                     |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
|(   |   )| | | De Boelelaan 1083 - 1081 HV Amsterdam - Netherlands   |
| \_/ \_/ | | | Tel: +31 20 44 47608 - Fax: +31 20 44 47610           |
|             | Feenstra at chem.vu.nl - www.chem.vu.nl/~feenstra/       |
|             | "If You See Me Getting High, Knock Me Down"           |
|             | (Red Hot Chili Peppers)                               |
|_____________|_______________________________________________________|