[gmx-users] Peptide interactions with membrane lipids

[David]

On Sun, 2003-10-12 at 05:53, Aswin Sai Narain wrote:
> Hi all
> 
> 
> I have a major doubt. How do I actually go about placing the peptide in the
> membrane environment? Is it correct to use genbox using dppc as solvent?
> Because, when I did this, the following happened.
I am not sure this is a good idea. You may be better off using the
make_hole script/program from graham smith, check:
http://www.gromacs.org/contributions/index.php

> 
> David.
> ________________________________________________________________________
> David van der Spoel, PhD, Assist. Prof., Molecular Biophysics group,
> Dept. of Cell and Molecular Biology, Uppsala University.
> Husargatan 3, Box 596,  	75124 Uppsala, Sweden
> phone:	46 18 471 4205		fax: 46 18 511 755
> spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++