[gmx-users] Making pdb files

Amy Petrik apetrik at umd.edu
Tue Aug 3 21:46:19 CEST 2004

Hi Guys!

I need to make a pdb file for a peptide we are using.  I know that I can create one in a program like chem3d but when I use that file it doesn't work in gromacs.  I am creating the pdb on a mac and using gromacs on a linux box.  I have tried doing some light editting to make it work but the backbone doesn't even appear to be connected.  What is everyone else doing to make pdb files?  Thanks!

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