[gmx-users] segmentation fault

[Anton Feenstra]

Dinesh Pinisetty wrote:

> 
> 
> 
> Hello everybody,
>         I created a bilayer of DPPc membrane and then i added water
> molecules first with genbox and then tried to run energy minimization.
> Firstly I used grompp to create a input file (input.tpr)combining .gro and
> .top added with water.
> Then I used
> mdrun -nice 0 -v -s input.tpr -o dppc_traj.trr -c dppc_water.gro -e
> minim_ener.edr
> If I type the above command i get an error as
>      "Segmentation fault"
> I do not understand where is the mistake........
> Please,I would be grateful if someone could help me out in this
> regard,please suggest how to avoid this error and perform Energy

Check for errors or warnings in the output of grompp.


-- 
Groetjes,

Anton
  _____________ _______________________________________________________
|             |                                                       |
|  _   _  ___,| K. Anton Feenstra                                     |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
|(   |   )| | | De Boelelaan 1083 - 1081 HV Amsterdam - Netherlands   |
| \_/ \_/ | | | Tel: +31 20 44 47608 - Fax: +31 20 44 47610           |
|             | Feenstra at chem.vu.nl - www.chem.vu.nl/~feenstra/       |
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