[gmx-users] slightly off topic: Hole program

Xavier Periole x.periole at chem.rug.nl
Wed Dec 1 15:27:32 CET 2004

mark wrote:

> Tieleman et al. (1)  used Oliver Smart's 'HOLE' program (2) to 
> evaluate the channel size of transmembrane pores. We would like to do 
> something similar. However it seems that Smart has moved, and after 
> several weeks, we have gotten no response from emails and webpage 
> applications. Does anyone know how to obtain this program or its 
> equivalent?
> thanks
> M. Vaughn
> (1) Tieleman, D. P., B. Hess, and M. S. P. Sansom. 2002. Analysis and 
> Evaluation of Channel Models: Simulations of Alamethicin. Biophys. J. 
> 83:2393-2407
> (2) O,S. Smart, J.G. Neduvelila, X. Wang, B. A. Wallacea and M. S. P. 
> 1996 Sansom.HOLE: A Program for the Analysis of the Pore Dimensions of 
> Ion Channel Structural Models  J. Mol. Graphics. 14:354-360.

You should check the paper:
J.D. Faraldo-Gomez et al., Eur. Biophys. J. (2002) 31, 217-227



   Xavier Periole - Ph.D.

   Dept. of Biophysical Chemistry / MD Group 
   Univ. of Groningen
   Nijenborgh 4
   9747 AG Groningen
   The Netherlands

   Tel: +31-503634329
   Fax: +31-503634800
   email: x.periole at chem.rug.nl
   web-page: http://md.chem.rug.nl/~periole

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