[gmx-users] GDP topology

Michal Kolinski mkolin at iimcb.gov.pl
Mon Dec 13 12:56:57 CET 2004

Hi all!

I need to simulate rhodopsin in lipid bilayer with G protein + GDP

I'm not certain if the topology file  (charges)  for GDP that I have obtained using PRODRG

server is right for me.  I plan to use (ffgmx_lipids.tar.gz)  ffgmx force field modified 

to use with lipids from gromacs site.  (At the beginning I did a short simulation of  GDP 

in box of water only and everything seemed fine).  Please give me some comment and

thank you in advice. 
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20041213/11e76479/attachment.html>

More information about the gromacs.org_gmx-users mailing list