[gmx-users] GDP topology
mkolin at iimcb.gov.pl
Mon Dec 13 12:56:57 CET 2004
I need to simulate rhodopsin in lipid bilayer with G protein + GDP
I'm not certain if the topology file (charges) for GDP that I have obtained using PRODRG
server is right for me. I plan to use (ffgmx_lipids.tar.gz) ffgmx force field modified
to use with lipids from gromacs site. (At the beginning I did a short simulation of GDP
in box of water only and everything seemed fine). Please give me some comment and
thank you in advice.
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