[gmx-users] prodrg

Yuhua Song yhsong at ccb.wustl.edu
Wed Jan 14 03:38:01 CET 2004

The topology file generated from PRODRG is the united atom forcefield. I
am using gromacs forcefield for the work, I am wondering whether the
Gromacs forcefield for the biomembrane are also united atom force field.

Thank you in advance.


On Wed, 2004-01-07 at 15:40, David wrote:
> On Wed, 2004-01-07 at 23:28, Osmany Guirola Cruz wrote:
> > i use the PRODRG server for obtain the gromacs files for my LPS an it
> > give a zipped files. with 
> > DRGFIN.GRO and DRGGMX.ITP how i use these files to do my em , pr, md
> > simulations the grompp day that topol.top does not exist and is logic
> > what should i do whith the itp file 
> > 
> > 
> chapter 5 in the manual describes it. also the tutorial might be
> helpful...
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Yuhua Song, Ph. D.

Center for Computational Biology
Washington University in St. Louis, School of Medicine
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E-mail: yhsong at ccb.wustl.edu

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