[gmx-users] prodrg

[David]

On Wed, 2004-01-14 at 03:37, Yuhua Song wrote:
> The topology file generated from PRODRG is the united atom forcefield. I
> am using gromacs forcefield for the work, I am wondering whether the
> Gromacs forcefield for the biomembrane are also united atom force field.
> 
yes it is. check the topologies and information on Peter Tieleman's
website.
> Thank you in advance.
> 
> Yuhua
> 
> 
> On Wed, 2004-01-07 at 15:40, David wrote:
> > On Wed, 2004-01-07 at 23:28, Osmany Guirola Cruz wrote:
> > > i use the PRODRG server for obtain the gromacs files for my LPS an it
> > > give a zipped files. with 
> > > DRGFIN.GRO and DRGGMX.ITP how i use these files to do my em , pr, md
> > > simulations the grompp day that topol.top does not exist and is logic
> > > what should i do whith the itp file 
> > > 
> > > 
> > chapter 5 in the manual describes it. also the tutorial might be
> > helpful...
> > 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assist. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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