spoel at xray.bmc.uu.se
Wed Jan 14 06:14:01 CET 2004
On Wed, 2004-01-14 at 03:37, Yuhua Song wrote:
> The topology file generated from PRODRG is the united atom forcefield. I
> am using gromacs forcefield for the work, I am wondering whether the
> Gromacs forcefield for the biomembrane are also united atom force field.
yes it is. check the topologies and information on Peter Tieleman's
> Thank you in advance.
> On Wed, 2004-01-07 at 15:40, David wrote:
> > On Wed, 2004-01-07 at 23:28, Osmany Guirola Cruz wrote:
> > > i use the PRODRG server for obtain the gromacs files for my LPS an it
> > > give a zipped files. with
> > > DRGFIN.GRO and DRGGMX.ITP how i use these files to do my em , pr, md
> > > simulations the grompp day that topol.top does not exist and is logic
> > > what should i do whith the itp file
> > >
> > >
> > chapter 5 in the manual describes it. also the tutorial might be
> > helpful...
> > > _______________________________________________
> > > gmx-users mailing list
> > > gmx-users at gromacs.org
> > > http://www.gromacs.org/mailman/listinfo/gmx-users
> > > Please don't post (un)subscribe requests to the list. Use the
> > > www interface or send it to gmx-users-request at gromacs.org.
David van der Spoel, PhD, Assist. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
More information about the gromacs.org_gmx-users