[gmx-users] Long range dispersion correction
David van der Spoel
spoel at xray.bmc.uu.se
Fri Jul 2 10:33:57 CEST 2004
On Fri, 2004-07-02 at 10:11, david.evans at ulsop.ac.uk wrote:
> David,
>
> Thanks for the reply. Here is the file.
could be that the minimizer does not calculate it. Try one step of MD
instead.
>
> Dave
>
>
>
> ---- Message from David <spoel at xray.bmc.uu.se> at 2004-07-01 20:32:24
> ------
> >On Thu, 2004-07-01 at 19:42, david.evans at ulsop.ac.uk wrote:
> >> Dear Gromacs users,
> >>
> >> I'm simulating a system with explicit water and periodic boundary
> >> conditions.
> >> I have rlist = rvdw = 1.2 in this case.
> >>
> >> When I add the line
> >> dispcorr = enerpres
> >> to my .mdp file, I get output
> >> LJ (SR) Disper. corr. Coulomb (SR) Coulomb (LR)
> >> Potential
> >> 1.56851e+04 0.00000e+00 -1.37844e+05 -1.41460e+04
> >> -1.47582e+05
> >>
> >> i.e. the dispersion correction is zero, but the program has
> >> recognised that I want to calculate it.
> >> What could cause this number to be zero?
> >It shouldn't be. Can you mail me the mdp file?
> >>
> >> Thanks
> >>
> >> Dave Evans
> >> London School of Pharmacy
> >> _______________________________________________
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> >--
> >David.
> >_____________________________________________________________________
> ___
> >David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
> >Dept. of Cell and Molecular Biology, Uppsala University.
> >Husargatan 3, Box 596, 75124 Uppsala, Sweden
> >phone: 46 18 471 4205 fax: 46 18 511 755
> >spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
> >+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> +++
> >
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>
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--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: +46 18 471 4205 fax: +46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
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