[gmx-users] protein-lipid order

[Xavier Periole]

John Simms wrote:

>Hi all
>I am a bit stuck. I have a protin-lipid bilayer and want to measure the
>lipid order
>vrs distance from the protein. Tried g_order, but it does do the distance
>from the
>protein bit (i think).
>Any offers?
>Cheers
>John
>
>  
>
Don't get the "protein bit".
You can use trjorder to first order the lipids in function of their 
distance to the
protein and then give an index to g_order defining the different shells 
around
the protein.

XAvier

-- 
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   Xavier Periole - Ph.D.

   Dept. of Biophysical Chemistry / MD Group 
   Univ. of Groningen
   Nijenborgh 4
   9747 AG Groningen
   The Netherlands

   Tel: +31-503634329
   Fax: +31-503634800
   email: x.periole at chem.rug.nl
   web-page: http://md.chem.rug.nl/~periole
   
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