[gmx-users] residue database

Dinesh Pinisetty dpinis1 at lsu.edu
Tue Jul 6 19:22:34 CEST 2004

Hello everybody,
       When I asked for the residue that was missing 'MeO' and the atom
under it 'Me1',I was given a reply to use prodrg server or to add the
residue and atom manually.
   I cannot add this atom or the residue manually as I do not have the
information about the atom.So I tried using prodrg server,now the problem
is even this server does not recognize the atom Me1.Its not executing the
pdb file.
 Please suggest me what to do now to get the topology and coordinate
files.By the way these files where readily created in the tutor of Gromacs
so please someone help me out in explaining me the procedure in which it
was created and giving me information about the atom
Me1(bonds,charge,charge groups,improper dihedrals etc)what all are
applicable to this atom and which all are required to add this in
 Thanks in advance...........

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