[gmx-users] Stuck at Invaccum MD

[anwar at cdfd.org.in]

Dear Gromacs users,
  
I am facing a problem with Invaccum MD. I was doing Invaccum MD of a protein 
molecule. At the step of mdrun, it stopped after some hours and gave a 
warning in the log file as given below. 

Step 519671 Warning: pressure scaling more than 1%, mu: 0.986492 0.986492 
0.986492 

The emtol was set at 100.

Can any one tell me where the problem is?

Anwar
----------------------
Mohd Anwaruddin, M.Sc.
C/o DR.H.A.Nagarajaram,
Lab of Computational Biology and Bioinformatics
CDFD,
Nacharam,
Hyderabad-500 076, INDIA.
Tel : +91-40-27151344 ext 1207,1208.
anwar_m1 at rediffmail.com
-----------------------

-