[gmx-users] Center
Raghunadha Reddy Burri
burri at heineken.chemie.uni-dortmund.de
Fri Jul 23 14:32:44 CEST 2004
Dear GMX users,
In my simulation of protein and water frequently going out of cubic box!
Periodic boundary conditions in all directions means no more out of box
( because every side have another box same as current box) but really I do
not understand how some of simulation frames showing protein (some time water
also) going out of box, this is really getting problem to make a movie from
trajectory file.
How can possible to maintain protein in cubic box?
Looking for positive reply.
Thank you for your time and consideration.
Till Then
Burri
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