[gmx-users] A problem about H-bonds

tenghl hailong at seas.ucla.edu
Thu Jul 29 16:47:40 CEST 2004

Dear all,

I am using GROMACS to analysis my DNA mol, but I have a question can not solve,can you help me ?
After I create a dna.pdb file ,I can not make the gromacs konwn where are H-bonds between two residiew , so though i can make the full mdrun ,but there are no h-bond in it .

Another problem is that how can i make the gromacs konwn my H atom in my PDB file if i do not want to use -ignh ?

Thanks for advance


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