[gmx-users] PDB2GMX: No Silicon Atoms Found

Ilya Chorny ichorny at maxwell.compbio.ucsf.edu
Mon Jun 21 23:40:40 CEST 2004

PDB2GMX only works on  residues contained in the .rtp files for the
corresponding force field.
Make your own topology file .itp. You can us the PRODRG server


-----Original Message-----
From: gmx-users-bounces at gromacs.org
[mailto:gmx-users-bounces at gromacs.org] On Behalf Of Gromacs Newbie
Sent: Monday, June 21, 2004 1:22 PM
To: gmx-users at gromacs.org
Subject: [gmx-users] PDB2GMX: No Silicon Atoms Found


When I try to convert a PDB file containing silicon
molecules, PDB2GMX can not find those atoms.  How do I
enable support for Silicon atoms in Gromacs.  Thank


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