[gmx-users] Re: aggregation

[SANTINI sebastien]

On Thursday 11 March 2004 17:47, Raghunadha Reddy Burri wrote:
> sorry not same distance, some distance between those at initial state
>
> On Thursday 11 March 2004 17:09, you wrote:
> > Hi,
> >
> > Any one give me suggestions to add three monomers into a water box with
> > same distance between each other at 0 ns.
> >
> > looking for positive reponse
> >
> > Thank you very much
> >
> > RB
>


Hello,
I think it is possible to something as MOLMOL to create a multimer and save 
your pdbfile
then edit your file and define the  different chains (A, B, C ...)

Finaly you define the box around the multimer, fill it with solvant, minimize 
and run your simulation.

SEB.

-- 
____________________________________________________________________

Sebastien SANTINI, PhD Student
sebastien.santini at igs.cnrs-mrs.fr
Tel:   +33 4 91 16 44 55                Fax:   +33 4 91 16 45 49
Laboratory of Structural & Genomic Information (IGS), UPR2589 - CNRS
Institute of Structural Biology & Microbiology (IBSM)
31 Chemin Joseph Aiguier, 13402 Marseille Cedex 20, FRANCE
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