[gmx-users] pressure scaling
Ilya Chorny
ichorny at maxwell.compbio.ucsf.edu
Sun Mar 14 17:47:00 CET 2004
Increase tau_p and make sure you are fully equillibrated.
What type of coulombtype are you using?
Ilya
-----Original Message-----
From: gmx-users-admin at gromacs.org [mailto:gmx-users-admin at gromacs.org]On
Behalf Of sadhna
Sent: Sunday, March 14, 2004 3:36 AM
To: gmx-users at gromacs.org
Subject: [gmx-users] pressure scaling
hi all,
I am doing high temperature simulations(400k) at constant
pressure(15bar, to keep water in liquid state)
the parameters in mdp file are:
Pcoupl = Berendsen
Pcoupltype = Isotropic
tau_p = 1.0
compressibility = 4.5e-5
ref_p = 15.0
i varied 15 to 25 bars am geeting same kind of results
step 61 Warning: pressure scaling more than 1%, mu: 1.03451 1.03451
1.03451
Step 62 Warning: pressure scaling more than 1%, mu: 1.21326e+09
1.21326e+09 1.21326e+09
Warning: 1-4 interaction at distance larger than 1
step 63 Warning: pressure scaling more than 1%, mu: inf inf inf
Warning: Only triclinic boxes with the first vector parallel to the x-axis
and the second vector in the xy-plane are supported.
Box (3x3):
Box[ 0]={ nan, nan, nan}
Box[ 1]={ nan, nan, nan}
Box[ 2]={ nan, nan, nan}
Can not fix pbc.
Sadhna Joshi
Research Scholar
Dept of Chemical Engg
Indian Institute of Technology,Powai
Mumbai-400076
India
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