[gmx-users] [Help] Water polarizabilty!

David spoel at xray.bmc.uu.se
Wed Mar 24 08:24:01 CET 2004


On Wed, 2004-03-24 at 03:42, Yinghong wrote:
> Dear users:
> 
> While simulation, I noted that I am quite confused with the concept
> "water polarizability". As known, the choice of water model probably
> influence the dynamics properties of system.
> 
> I wanna know under what case should we include the explicit
> polarizability into water model? How about my simulation, DNA-Protein
> interactions?
Would be good, but there are no complete polarizable force fields for
proteins and/or dna yet. 
> 
> Thanks a lot!
> 
>  
> 
> Regards
> 
> Xie YH
> 
> xieyh at hkusua.hku.hk
> 
>  
-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assist. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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