[gmx-users] hydration of bilayer?

Carl-Johan Högberg cjh at physc.su.se
Thu Mar 25 19:39:01 CET 2004

Hi all!

Im trying to hydrate a lipid bilayer. Im using genbox and the inputline is:

genbox -cp dmpctest.gro -ci spc.gro -nmol 200 -vdwd 0.5 -p dmpctest.top 
-o dmpctest2.gro

Dispite having a vdwd = 0.5 i get plenty of water molecules inside the 
membrane. Does anybody have any idee how to avoid this?

Best regards

Carl-Johan Högberg
Department of Physical Chemistry
Arrhenius Laboratory
Stockholm University
S-106 91 Stockholm
Phone: +46-8-162373

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