[gmx-users] OPLS-AA time step
David
spoel at xray.bmc.uu.se
Thu May 20 23:13:33 CEST 2004
> > With -dummy aromatics you should use the gromos96 force field.
> > With -dummy h you can also use the OPLS force field (if you need all
> > atoms). ffgmx2 is deprecated.
> >
>
> Dear gromacs users,
>
> can I increase the maximal allowed time step form 2 to 5 fs, when using
> OPLS-AA with -dummy hydrogens?
I have hitherto used not more than 4 fs, but of course you can do some
tests yourself, as in the Feenstra et al. paper
@Article{Feenstra99a,
author = {K. Anton Feenstra and Berk Hess and Herman J. C.
Berendsen},
title = {Improving Efficiency of Large Time-scale Molecular Dynamics
Simulations of Hydrogen-rich Systems},
journal = {J. Comp. Chem.},
year = 1999,
volume = 20,
pages = {786-798}
}
>
> ciao
>
>
> thomas
>
> ---
> Thomas Stockner
> Department of Biological Sciences
> Biol. 414-416
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>
>
>
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--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
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