[gmx-users] Re: Movie from PDB files

Kay Gottschalk kay.gottschalk at weizmann.ac.il
Fri Nov 5 08:36:16 CET 2004

You can concatenate all the pdb files into one file with the MODEL 
number increasing. Then VMD looks at it like a trajectory.

On Nov 4, 2004, at 5:54 PM, Gaurav Porwal wrote:

> Dear Kay,
> I checked out the VMD site. As far as I can comprehend, VMD can 
> visualize
> the simulation progress if one has a trajectory file generated from 
> any of
> the molecular simulation softwares like gromacs.
> What I wanted specifically is that what can be done if one doesn't have
> any trajectory file, instead a few thousand PDB files. One idea is to
> convert all the files to jpeg images and make a movie out of it. If 
> anyone
> can let me know a software that can generate jpeg for such large no. of
> files automatically, then I would be grateful.
> Is there any other solution.
> Thanks.
> regards,
> Gaurav
>> Message: 2
>> Date: Wed, 3 Nov 2004 10:56:21 +0200
>> From: Kay Gottschalk <kay.gottschalk at weizmann.ac.il>
>> Subject: Re: [gmx-users] Movie from PDB files
>> VMD does it.
>> K.
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Dr. Kay-E. Gottschalk
Department of Biological Chemistry
Weizmann Institute of Science
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