[gmx-users] Re: Movie from PDB files
kay.gottschalk at weizmann.ac.il
Fri Nov 5 08:36:16 CET 2004
You can concatenate all the pdb files into one file with the MODEL
number increasing. Then VMD looks at it like a trajectory.
On Nov 4, 2004, at 5:54 PM, Gaurav Porwal wrote:
> Dear Kay,
> I checked out the VMD site. As far as I can comprehend, VMD can
> the simulation progress if one has a trajectory file generated from
> any of
> the molecular simulation softwares like gromacs.
> What I wanted specifically is that what can be done if one doesn't have
> any trajectory file, instead a few thousand PDB files. One idea is to
> convert all the files to jpeg images and make a movie out of it. If
> can let me know a software that can generate jpeg for such large no. of
> files automatically, then I would be grateful.
> Is there any other solution.
>> Message: 2
>> Date: Wed, 3 Nov 2004 10:56:21 +0200
>> From: Kay Gottschalk <kay.gottschalk at weizmann.ac.il>
>> Subject: Re: [gmx-users] Movie from PDB files
>> VMD does it.
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Dr. Kay-E. Gottschalk
Department of Biological Chemistry
Weizmann Institute of Science
Herzl St. 1
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