[gmx-users] Re: Re: trr visualization

[Cesar Lopez]

Hi Kia:

Actually I agree with you. Now I am going to load my
file structure file, and then the trr file but in VMD

Thank you
--- Kia Balali-Mood <Kia.Balali-Mood at ed.ac.uk> wrote:

> Hi Cesar,
> 
> NGMX can write pdb or gro files if u  click on file
> > export and specify a file
> name either *.gro or *.pdb, it will only give u
> co-ordinate files and u can
> stop the animation at any point to save a
> co-ordinate file.
> 
> Though I should point out that ngmx doesn't give u
> velocities of ur system!!!
> 
> Kia
> 
> > On Thu, 2004-11-11 at 14:22 -0800, Cesar Lopez
> wrote:
> > > Hi anybody:
> > >
> > > I have some problems with .trr files
> > > visualizations,nowadays I have the VMD package
> > > installed in my pc, when I try to load a trr
> file, the
> > > software load the file, but indeed I can't see
> > > anything in the screen. I tried to use the VEGA
> > > package to see the .xtc file generated by
> Gromacs, but
> > > the software can't open it !
> > In VMD you first load a pdb file then a trr or xtc
> file.
> > >
> > > There is only a way to see the file and is with
> the
> > > comand ngmx, but the resolution is not good and
> it
> > > can't write pdb files.
> > > Can anybody help me with it?
> > > Thank you very much
> > > Cesar
> > >
> 
>
******************************************************************************
> Kia Balali-Mood
> Laboratory of Membrane Biophysics
> Division of Veterinary Biomedical Sciences
> College of Medicine & Veterinary Medicine
> The Vet School
> University of Edinburgh
> Summerhall
> Edinburgh, EH9 1QH
> Tel. +44 (0)131 650 6142
> Fax. +44 (0)131 650 6576
> leaflet.vet.ed.ac.uk
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